USA

library(denguedatahub)
library(tsibble)

Dengue and severe dengue cases and deaths for subregions of the Americas

head(americas_annual_data)

# A tibble: 6 × 5
  region           country type   cases year 
  <chr>            <chr>   <chr>  <chr> <chr>
1 Andean Subregion Bolivia Dengue 0     1980 
2 Andean Subregion Bolivia Dengue 0     1980 
3 Andean Subregion Bolivia Dengue 0     1980 
4 Andean Subregion Bolivia Dengue 0     1980 
5 Andean Subregion Bolivia Dengue 0     1980 
6 Andean Subregion Bolivia Dengue 0     1981 

All dengue cases by week in US states and territories, 2010 - 2023

head(cdc_casesby_week)

# A tibble: 6 × 4
   Year Travel.status Week  Reported.cases
  <dbl> <chr>         <chr>          <dbl>
1  2010 All           01               189
2  2010 All           02                75
3  2010 All           03               100
4  2010 All           04               113
5  2010 All           05               112
6  2010 All           06               123

Dengue cases by age group and sex in US states and territories, 2010 - 2023

head(cdc_dengue_agesex)

# A tibble: 6 × 5
   Year Travel.status Age       Male Female
  <dbl> <chr>         <chr>    <dbl>  <dbl>
1  2010 All           < 1        0.9    0.6
2  2010 All           1 to 10    6.4    6  
3  2010 All           11 to 19  20.4   15.6
4  2010 All           20 to 29   7.7    6.3
5  2010 All           30 to 39   4.8    3.9
6  2010 All           40 to 49   4.6    3.6

All dengue cases by jurisdiction of residence in US states and territories, 2010 - 2023

head(cdc_dengue_casesbyjurisdiction)

# A tibble: 6 × 6
   Year Travel.status Jurisdiction Count Legend Notes
  <dbl> <chr>         <chr>        <dbl> <chr>  <chr>
1  2010 All           AK               1 1 to 4 <NA> 
2  2010 All           AL               4 1 to 4 <NA> 
3  2010 All           AR               1 1 to 4 <NA> 
4  2010 All           IA               2 1 to 4 <NA> 
5  2010 All           ID               3 1 to 4 <NA> 
6  2010 All           KS               4 1 to 4 <NA> 

All dengue cases by county of residence in US states and territories, 2010 - 2023

head(cdc_dengue_countyyear)

# A tibble: 6 × 7
  FullGeoName         Year Travel.status County Legend Notes  ``                
  <chr>              <dbl> <chr>         <chr>  <chr>  <chr>  <chr>             
1 AL, Baldwin         2010 All           01003  1 to 4 1 to 4 AL, Baldwin County
2 AL, Jefferson       2010 All           01073  1 to 4 1 to 4 AL, Jefferson Cou…
3 AL, Madison         2010 All           01089  1 to 4 1 to 4 AL, Madison County
4 AL, Mobile          2010 All           01097  1 to 4 1 to 4 AL, Mobile County 
5 AK, Anchorage Muny  2010 All           02020  1 to 4 1 to 4 AK, Anchorage, Mu…
6 AZ, Pima            2010 All           04019  1 to 4 1 to 4 AZ, Pima County   

Locally acquired dengue cases by year, 2010 - 2023

head(cdc_local_dengue_cases)

# A tibble: 6 × 3
   Year Travel.status    Reported.cases
  <dbl> <chr>                     <dbl>
1  2010 Locally acquired          10969
2  2011 Locally acquired           1552
3  2012 Locally acquired           6169
4  2013 Locally acquired           9933
5  2014 Locally acquired            551
6  2015 Locally acquired            261

Travel associated dengue cases by year, 2010 - 2023

head(cdc_travel_associated_dengue_cases)

# A tibble: 6 × 3
   Year Travel.status     Reported.cases
  <dbl> <chr>                      <dbl>
1  2010 Travel associated            642
2  2011 Travel associated            243
3  2012 Travel associated            545
4  2013 Travel associated            794
5  2014 Travel associated            667
6  2015 Travel associated            751

Annual number of dengue fever infections in the USA

head(cdc_usa_dengue_infection)

# A tibble: 6 × 6
  area              year  week dengue_cases dengue_like_illness severe_dengue
  <chr>            <dbl> <dbl>        <dbl> <lgl>               <lgl>        
1 NON-US RESIDENTS  2022     2           NA NA                  NA           
2 NEVADA            2022     2           NA NA                  NA           
3 MISSOURI          2022     2           NA NA                  NA           
4 NEW JERSEY        2022     2           NA NA                  NA           
5 RHODE ISLAND      2022     2           NA NA                  NA           
6 WISCONSIN         2022     2           NA NA                  NA           

Data Source: Centers for Disease Control and Prevention